MAPPs Complete chain (Sarek → DeepSomatic → epitopeprediction → Casanovo) verified end-to-end. AlphaDIA cohorts at $0.05 per sample, 13 minutes wall-clock. Glyco-MAPPs at $0.73 per cohort. Same open-source tools your team already cites. Your data never leaves your VPC.
$4K paid pilot, scoped to one workflow · $750/mo BYOC after · First reference customer free
Spot pricing, checkpoint-restart on, us-east-1. Reproducibility bundle on every run.
All benchmarks below are on public datasets (PRIDE, GIAB) so any reviewer can verify the numbers. Customer-anonymized case studies follow our first reference deployments.
WES + tumor-normal variant calling + epitope prediction + de novo MS/MS. Picks up the HLA-presented peptides database search misses.
AlphaDIA + MS2Rescore parallelized across samples. 50-sample cohorts in 13 minutes instead of 10+ hours on a workstation.
Raw → oxonium QC → N/O-glycan search → de novo validation → structure prediction. Surfaces druggable Tn-glycopeptide ADC targets.
Pinned versions, GPU-tuned where applicable, Slurm-ready. Add a tool we don't list and we'll containerize it in a week.
Cross-account IAM role, ~10 minutes to set up. Your S3, your KMS, your audit trail. No upload to a vendor cloud.
Uses your Reserved Instances, Savings Plans, and credits. We don't sit in the spend path. Flat $750/mo for the control plane, after the pilot.
CROs invoice by patient. We stamp the per-job AWS spend onto every Slurm job so your finance team can map compute to client invoices.
· 5–50 person proteomics CRO or biotech
· Running MAPPs / DIA / glyco / TCR pipelines on a workstation or homebrew Slurm
· One bioinformatician maintaining the pipeline alongside their day job
· Open-source-first software stack (Casanovo, Sage, AlphaDIA, MetaMorpheus, etc.)
· Patient samples or IP-sensitive cohorts that shouldn't go to a vendor cloud
· Your pipeline is fully Spectronaut/Proteome Discoverer and the licenses are happy
· You already have an in-house platform / DevOps team running Slurm
· You need SOC 2 or HIPAA BAA in month one
· You're a single-person lab running one workload — buy a workstation instead
· You're a major pharma — you have an infra team
30 minutes to scope the workflow. 4 weeks of paid pilot ($4K, scoped to one workflow) — or free if you'll be our first reference customer in proteomics. After that, $750/mo BYOC.